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      <ows:Title>Habitat suitability maps for harbour porpoises in the North Sea-Baltic Sea transition zone from 1997 to 2022</ows:Title>
      <ows:Abstract>The dataset includes 6  layers showing modelled habitat suitability for harbour porpoises (Phocoena phocoena) across the North Sea–Baltic Sea transition zone over a 25-year period (1997–2004; 2005-2012; 2013-2022) during winter (Nov–Apr) and summer (May–Oct). Habitat suitability was estimated using the maximum entropy (MaxEnt) algorithm, based on satellite tag data of 111 individuals and a range of dynamic and static environmental conditions as predictor variables. Habitat suitability models and maps were developed by researchers of the Department of Ecoscience, Aarhus University to quantify potential spatiotemporal changes in the overlap between suitable habitats and an existing network of 62 MPAs dedicated to harbour porpoise protection. The habitat suitability rasters can inform effective design of forthcoming MPAs under the EU Biodiversity Strategy for 2030.
Harbour porpoise habitat suitability layers cover a seascape area of 70,145 km2. Habitat suitability layers are available for the periods: 1997–2004; 2005-2012; 2013-2022 and for both winter (Nov–Apr) and summer (May–Oct). All layers are projected using the EEA reference grid (ETRS89-LAEA Europe, EPSG:3035), have a 1x1 km spatial resolution (cell size) and a spatial extent of 4275000, 4545000, 3415000, 4105000  (xmin, xmax, ymin, ymax). Habitat suitability values (probabilities) range between 1 and 0 with values closer to 1 indicating habitat being highly suitable for harbour porpoises while values closer to 0 indicate habitat that is poorly suitable for harbour porpoises. Location data underlying the habitat suitability models were collected from 111 harbour porpoises tracked over the period 1997–2022 as part of a long-term satellite telemetry monitoring program in Denmark. Location and meta data are freely available at Zenodo (https://doi.org/10.5281/zenodo.13968991). 
Harbour porpoise habitat suitability layers were produced as part of the projects: GES4SEAS (grant agreement no. 101059877) and OBAMA-NEXT (101091642))</ows:Abstract>
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      <ows:Title>Modelled projections of habitat for commercial fish around North-western Europe under climate change, 2020 to 2060</ows:Title>
      <ows:Abstract>Environmental Niche Model (ENM) outputs for 49 commercial fish species under climate change until the decade of 2060 around northwestern Europe. A model ensemble of 5 ENMs was used (MaxEnt, Generalised Linear Models, Support Vector Machine, Random Forest and BIOCLIM ), and projections were made under three different emission scenarios: A1B, RCP4.5 and RCP 8.5. The data shows model agreement (normalised to 1) for presence/absence decadal projections from 2020 to 2060. Additionally we provide data on model performance, with the Area Under the Curve (AUC) scores of the Receiver Operator Characteristic (ROC) curve for each of the 5 ENMs trained for each combination of fish species and emission scenario. Only ENMs with an AUC score of at least 0.7 were considered.
The data is based on the output of an ensemble of 5 Environmental Niche Modeling techniques: Maximum Entropy (MaxEnt), Generalised Linear Model (GLM), Support Vector Machine (SVM), Random Forest and BIOCLIM. Each model was trained to capture the environmental requirements of individual fish species, using the 20 year-average in the period 1997-2016 of the environmental variables: near-bed sea temperature, sea surface temperature, near-bed salinity, sea surface salinity, the difference in near-bed and surface salinity and temperature (an approximation of stratification), and depth.
Once the models were trained, they were used to study future habitat suitability for the 49 commercially-important fish species in 20-year averages centered in 2020, 2030, 2040, 2050 and 2060. To produce maps of the suitable habitat, the model projections were converted to binary presence/absence data using the thresholds that optimized the True Skill Statistics (TSS) of each model. The data shows the model agreement, normalised to 1 (&quot;1&quot; denotes all ENMs agree an area is suitable, &quot;0&quot; denotes all ENMs agree an area is not suitable). The number of ENMs considered for each combination of fish species and emission scenario depends on model performance. A ENM model was considered if its Area Under the Curve (AUC) score of the Receiver Operator Characteristic (ROC) curve was at least 0.7. Model performance is listed in the file &quot;Model_performance_AUC.xlsx&quot;.
Model input data: Climate change projection data from Met Office and Plymouth Marine Laboratory (PML) and species presence and abundance records from online databases (Ocean Biodiversity Information System (OBIS), Global Biodiversity Information System (GBIF) and Marine Scotland (Moriarty, M., Greenstreet, S.P.R. and Rasmussen, J. (2017) Derivation of Groundfish Survey Monitoring and Assessment Data Product for the Northeast Atlantic Area. Scottish Marine and Freshwater Science, 8, 240pp. DOI: 10.7489/1984-1). Models were trained using the R and Maxent softwares. 
Study region: northeast Atlantic shelf. Latitudes between -17° and 9.25°; longitudes between 44° and 65°.
These datasets were produced for the study in the article &quot;Climate change projections of commercial fish distribution and suitable habitat around northwestern Europe&quot;, by Bryony L. Townhill, Elena Couce, Jonathan Tinker, Susan Kay, John K. Pinnegar, in Fish and Fisheries (2023; http://doi.org/10.1111/faf.12773).</ows:Abstract>
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      <ows:Abstract>Loggerhead turtles (Caretta caretta) are a globally vulnerable species of marine turtle. The Mediterranean Sea subpopulation, which ranges throughout the entire Mediterranean basin, is listed as least concern by the International Union for the Conservation of Nature (IUCN), but experiences significant threats in the region including bycatch in fisheries, climate change, coastal development, and marine pollution. Broad-scale patterns of distribution and abundance can provide regional managers a tool to effectively conserve and manage this species at basin and sub-basin scales.

In 2020, a spatial density model estimating loggerhead density, abundance, and distribution across the Mediterranean Sea was generated as a long-term annual average. The model was adjusted for availability bias using dive data from loggerhead turtles tagged with time depth recorders from multiple regions within the Mediterranean Sea. Geographic extrapolation in areas near surveys was undertaken with caution. Mean abundance for the long-term average model was estimated as 1,201,845 (CV 0.22). This estimate represents the first basin-wide estimate of abundance for this species in the Mediterranean not based on demographic models. This work was funded by the U.S. Navy to assist with assessing risk to protected marine species resulting from military readiness activities.

The data are an annual estimated density of loggerhead turtles, expressed as the number of individuals per square kilometer, within the Mediterranean Sea. The study area was gridded into 5x5 kilometer blocks, the resolution at which density modeling was performed. The study area encompasses all major subregions of the Mediterranean Sea, except the Sea of Marmara, which loggerhead turtles do not frequent. The DENSITY attribute contains the estimated density (individuals per square kilometer) and the UNCERTAINTY attribute contains the estimated coefficient of variation (CV) for the density estimate. The density estimates represent the mean throughout year, averaged for the period 2003-2018. For most of the study area, density was estimated using a habitat-based density model that correlated local abundance observed on systematic line transect surveys with environmental conditions observed at that same location and time. For unsurveyed areas and times, density was estimated by extrapolation. Density was not estimated for nearshore locations and inshore waters as they were often not covered by surveys or lacked reliable remoted sensed covariate coverage. See Sparks and DiMatteo (2020) for more information about the modeling process. The metadata documentation has more information regarding individual attributes.

The shoreline and other geographic features were delinated by NAVFAC from a database provided by the National Geospatial-Intelligence Agency (NGA).

These data have been re-projected from the original published data presented in DiMatteo et al. 2024, in order to meet EMODnet technical requirements. Small spatial mismatches and value discrepancies between the original model and the version available here may exist but have not been formally assessed.</ows:Abstract>
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      <ows:Abstract>3-D habitat suitability maps (HSM) or probability of occurrence maps, built using Shape-Constrained Generalized Additive Models (SC-GAMs) for the 30 main commercial species of the Atlantic region.

Predictor variables for each species were selected from: sea water temperature, salinity, nitrate, net primary productivity, distance to seafloor, distance to coast, and relative position to mixed layer depth. Each species HSM contains 47 maps, one per depth level from 0 to 1000 m. Probability values of each map range from 0 (unsuitable habitat) to 1 (optimal habitat). For depth levels below the 0.99 quantile of the depth values found on the species occurrence data, NA values were assigned. Maps have been masked to species native range regions. See Valle et al. (2024) in Ecological Modelling 490:110632 (https://doi.org/10.1016/j.ecolmodel.2024.110632), for more details.</ows:Abstract>
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      <ows:Title>Modelled projections of habitat for fish species feeding guilds around North-western Europe under climate change, 2010 to 2095</ows:Title>
      <ows:Abstract>These data are Bayesian Additive Regression Tree model annual predictions for habitat suitability of marine fish species across a range of body sizes and belonging to different feeding guilds from 2010 to 2095 in 5 year intervals in the northeast Atlantic shelf seas. Feeding guilds were allocated based on classifications following Thompson et al. (2020).
The purpose of this study was to predict how climate change could affect the species richness of consumers lower in the food web (planktivores), compared to those intermediate (benthivores) and higher up (piscivores).  In brief, a collation of trophic interactions spanning the northeast Atlantic shelf seas has been applied to define feeding guilds by grouping fish species size classes (we use the taxonomic level of Gobiidae and Ammodytes for taxa that are not consistently identified to species) that have prey taxa in common, and whose prey differentiate them from other predator guilds based on cluster analysis. Taxon-specific size categories were defined as: &lt;3 cm as larvae; small juvenile fish between 3 cm and half of length at maturity; juvenile-medium fish from half of length at maturity to length at maturity; medium fish from length at maturity to half-maximum length; and all remaining larger fish as large. Taxon-specific length at maturity and maximum length (i.e., asymptotic length at infinity) were estimated using the R package Fishlife (Thorson et al., 2017).
Environmental projections were derived from the coupled marine ecosystem models POLCOMS/NEMO-ERSEM. We focus on two emission scenarios (representative concentration pathways, RCPs) developed for the Intergovernmental Panel on Climate Change (IPCC)’s fifth phase of the Coupled Model Intercomparison Project (CMIP5): RCP4.5, the “stabilization scenario”, characterised by medium emissions and high mitigations, and the “no mitigation policy” scenario RCP8.5, derived from high fossil fuel emission and low mitigations. We use projections of temperature, salinity, pH, nitrate, phosphate, dissolved oxygen, current velocity, chlorophyll, gross primary production, non-living organic carbon, zooplankton carbon concentration and secondary carbon production by zooplankton in our predictive habitat models. For temperature, salinity, current velocity, dissolved oxygen, and pH both surface and bottom mean annual averages were considered, and in the case of temperature, also the difference between bottom and surface values, to account for stratification. For chlorophyll, gross primary production, non-living organic carbon, phosphate, nitrate, zooplankton carbon concentration and secondary carbon production by zooplankton the total across the water column was used, rather than surface or bottom values. We also include depth (from the General Bathymetric Chart of the Oceans GEBCO; www.gebco.net, at 15 second resolution), distance to coast and substrate composition (median grain size and percentages of mud, sand and gravel from Wilson et al., 2018) to capture key spatial gradients that affect habitat suitability for fish. 
All environmental data was processed onto a 10 km by 10 km grid, and because an annual mean of, e.g., temperature, does not capture the environmental variability that ultimately determines the thresholds within which biota must survive; for temperature, salinity, pH, oxygen and current speed we also include the standard deviation of the 12 monthly means in each year, for all locations within a radius of 75 km of each grid cell, in order to provide a measure of spatio-temporal heterogeneity. For the environmental variables where surface and bottom values were extracted, we use sea surface values to model habitat suitability for planktivores, which are largely pelagic species, and seabed values for the benthivores and piscivores which are largely demersal species. Pairwise Pearson correlation coefficients were computed for the set of environmental variables used to model the habitat of planktivores and of non-planktivores separately, to assess multicollinearity. Variables were removed if they correlated with another &gt;0.7.
Additionally we provide data on model performance and presence/absence thresholds, in the file &quot;Model performance and threshold.xlsx&quot;. Model performance is measured via the area under the curve (AUC) of the Receiver Operating Characteristic (ROC) plot, the AUC of the Precision-Recall (PR) plot (He &amp; Garcia, 2009), and the Miller slope (Miller et al., 1991). We assess model performance in both space and time. Spatial performance was analysed via 8-fold block cross validation using the R library “blockCV” (Valavi et al., 2019). Temporal performance of the models was assessed by training a new model that excluded the last 5 years of survey data (2015 to 2019), using the resulting model to predict to those 5 years, a “novel time period” for that model. 
These data were produced for the study in the article &quot;Climate change affects the distribution of diversity across marine food webs&quot;, by Murray S. A. Thompson, Elena Couce, Michaela Schratzberger and Christopher P. Lynam, in Global Change Biology (in press).</ows:Abstract>
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      <ows:Title>Density of Loggerhead Turtles in the Mediterranean Sea</ows:Title>
      <ows:Abstract>Loggerhead turtles (Caretta caretta) are a globally vulnerable species of marine turtle. The Mediterranean Sea subpopulation, which ranges throughout the entire Mediterranean basin, is listed as least concern by the International Union for the Conservation of Nature (IUCN), but experiences significant threats in the region including bycatch in fisheries, climate change, coastal development, and marine pollution. Broad-scale patterns of distribution and abundance can provide regional managers a tool to effectively conserve and manage this species at basin and sub-basin scales.

In 2020, a spatial density model estimating loggerhead density, abundance, and distribution across the Mediterranean Sea was generated as a long-term annual average. The model was adjusted for availability bias using dive data from loggerhead turtles tagged with time depth recorders from multiple regions within the Mediterranean Sea. Geographic extrapolation in areas near surveys was undertaken with caution. Mean abundance for the long-term average model was estimated as 1,201,845 (CV 0.22). This estimate represents the first basin-wide estimate of abundance for this species in the Mediterranean not based on demographic models. This work was funded by the U.S. Navy to assist with assessing risk to protected marine species resulting from military readiness activities.

The data are an annual estimated density of loggerhead turtles, expressed as the number of individuals per square kilometer, within the Mediterranean Sea. The study area was gridded into 5x5 kilometer blocks, the resolution at which density modeling was performed. The study area encompasses all major subregions of the Mediterranean Sea, except the Sea of Marmara, which loggerhead turtles do not frequent. The DENSITY attribute contains the estimated density (individuals per square kilometer) and the UNCERTAINTY attribute contains the estimated coefficient of variation (CV) for the density estimate. The density estimates represent the mean throughout year, averaged for the period 2003-2018. For most of the study area, density was estimated using a habitat-based density model that correlated local abundance observed on systematic line transect surveys with environmental conditions observed at that same location and time. For unsurveyed areas and times, density was estimated by extrapolation. Density was not estimated for nearshore locations and inshore waters as they were often not covered by surveys or lacked reliable remoted sensed covariate coverage. See Sparks and DiMatteo (2020) for more information about the modeling process. The metadata documentation has more information regarding individual attributes.

The shoreline and other geographic features were delinated by NAVFAC from a database provided by the National Geospatial-Intelligence Agency (NGA).

These data have been re-projected from the original published data presented in DiMatteo et al. 2024, in order to meet EMODnet technical requirements. Small spatial mismatches and value discrepancies between the original model and the version available here may exist but have not been formally assessed.</ows:Abstract>
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As many biodiversity estimates are biased by sampling effort, caution must be taken when interpreting alpha diversity from microscopy counts. By rarefaction and evenness estimation, these biases can be reduced, but not ignored.

This data product provides a spatial-temporal interpolation of zooplankton alpha diversity in the greater Baltic Sea area (including Skagerrak and Kattegat). Using observed Shannon diversity indices from environmental monitoring data, the product employs the DIVAnd (Data-Interpolating Variational Analysis in n-Dimensions) to create a three-dimensional interpolation across longitude, latitude, and seasonal time dimensions.

The output includes interpolated diversity values, an associated error map, and metadata on the spatial-temporal grid resolution. It is tailored for ecological and oceanographic studies, aiding in the visualization and analysis of diversity trends over time and space.</ows:Abstract>
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